Characterizing Data - Skewness and Kurtosis¶
By Evgenia "Jenny" Nitishinskaya, Maxwell Margenot, and Delaney Granizo-Mackenzie.
Part of the Quantopian Lecture Series:
Notebook released under the Creative Commons Attribution 4.0 License.
import matplotlib.pyplot as plt
import numpy as np
import scipy.stats as stats
Sometimes mean and variance are not enough to describe a distribution. When we calculate variance, we square the deviations around the mean. In the case of large deviations, we do not know whether they are likely to be positive or negative. This is where the skewness and symmetry of a distribution come in. A distribution is symmetric if the parts on either side of the mean are mirror images of each other. For example, the normal distribution is symmetric. The normal distribution with mean $\mu$ and standard deviation $\sigma$ is defined as $$ f(x) = \frac{1}{\sigma \sqrt{2 \pi}} e^{-\frac{(x - \mu)^2}{2 \sigma^2}} $$ We can plot it to confirm that it is symmetric:
# Plot a normal distribution with mean = 0 and standard deviation = 2
xs = np.linspace(-6,6, 300)
normal = stats.norm.pdf(xs)
plt.plot(xs, normal);
A distribution which is not symmetric is called skewed. For instance, a distribution can have many small positive and a few large negative values (negatively skewed) or vice versa (positively skewed), and still have a mean of 0. A symmetric distribution has skewness 0. Positively skewed unimodal (one mode) distributions have the property that mean > median > mode. Negatively skewed unimodal distributions are the reverse, with mean < median < mode. All three are equal for a symmetric unimodal distribution.
The explicit formula for skewness is: $$ S_K = \frac{n}{(n-1)(n-2)} \frac{\sum_{i=1}^n (X_i - \mu)^3}{\sigma^3} $$
Where $n$ is the number of observations, $\mu$ is the arithmetic mean, and $\sigma$ is the standard deviation. The sign of this quantity describes the direction of the skew as described above. We can plot a positively skewed and a negatively skewed distribution to see what they look like. For unimodal distributions, a negative skew typically indicates that the tail is fatter on the left, while a positive skew indicates that the tail is fatter on the right.
# Generate x-values for which we will plot the distribution
xs2 = np.linspace(stats.lognorm.ppf(0.01, .7, loc=-.1), stats.lognorm.ppf(0.99, .7, loc=-.1), 150)
# Negatively skewed distribution
lognormal = stats.lognorm.pdf(xs2, .7)
plt.plot(xs2, lognormal, label='Skew < 0')
# Positively skewed distribution
plt.plot(xs2, lognormal[::-1], label='Skew > 0')
plt.legend();
Although skew is less obvious when graphing discrete data sets, we can still compute it. For example, below are the skew, mean, and median for S&P 500 returns 2012-2014. Note that the skew is negative, and so the mean is less than the median.
start = '2012-01-01'
end = '2015-01-01'
pricing = get_pricing('SPY', fields='price', start_date=start, end_date=end)
returns = pricing.pct_change()[1:]
print 'Skew:', stats.skew(returns)
print 'Mean:', np.mean(returns)
print 'Median:', np.median(returns)
plt.hist(returns, 30);
Kurtosis¶
Kurtosis attempts to measure the shape of the deviation from the mean. Generally, it describes how peaked a distribution is compared the the normal distribution, called mesokurtic. All normal distributions, regardless of mean and variance, have a kurtosis of 3. A leptokurtic distribution (kurtosis > 3) is highly peaked and has fat tails, while a platykurtic distribution (kurtosis < 3) is broad. Sometimes, however, kurtosis in excess of the normal distribution (kurtosis - 3) is used, and this is the default in scipy. A leptokurtic distribution has more frequent large jumps away from the mean than a normal distribution does while a platykurtic distribution has fewer.
# Plot some example distributions
plt.plot(xs,stats.laplace.pdf(xs), label='Leptokurtic')
print 'Excess kurtosis of leptokurtic distribution:', (stats.laplace.stats(moments='k'))
plt.plot(xs, normal, label='Mesokurtic (normal)')
print 'Excess kurtosis of mesokurtic distribution:', (stats.norm.stats(moments='k'))
plt.plot(xs,stats.cosine.pdf(xs), label='Platykurtic')
print 'Excess kurtosis of platykurtic distribution:', (stats.cosine.stats(moments='k'))
plt.legend();
The formula for kurtosis is $$ K = \left ( \frac{n(n+1)}{(n-1)(n-2)(n-3)} \frac{\sum_{i=1}^n (X_i - \mu)^4}{\sigma^4} \right ) $$
while excess kurtosis is given by $$ K_E = \left ( \frac{n(n+1)}{(n-1)(n-2)(n-3)} \frac{\sum_{i=1}^n (X_i - \mu)^4}{\sigma^4} \right ) - \frac{3(n-1)^2}{(n-2)(n-3)} $$
For a large number of samples, the excess kurtosis becomes approximately
$$ K_E \approx \frac{1}{n} \frac{\sum_{i=1}^n (X_i - \mu)^4}{\sigma^4} - 3 $$Since above we were considering perfect, continuous distributions, this was the form that kurtosis took. However, for a set of samples drawn for the normal distribution, we would use the first definition, and (excess) kurtosis would only be approximately 0.
We can use scipy to find the excess kurtosis of the S&P 500 returns from before.
print "Excess kurtosis of returns: ", stats.kurtosis(returns)
The histogram of the returns shows significant observations beyond 3 standard deviations away from the mean, multiple large spikes, so we shouldn't be surprised that the kurtosis is indicating a leptokurtic distribution.
Other standardized moments¶
It's no coincidence that the variance, skewness, and kurtosis take similar forms. They are the first and most important standardized moments, of which the $k$th has the form $$ \frac{E[(X - E[X])^k]}{\sigma^k} $$
The first standardized moment is always 0 $(E[X - E[X]] = E[X] - E[E[X]] = 0)$, so we only care about the second through fourth. All of the standardized moments are dimensionless numbers which describe the distribution, and in particular can be used to quantify how close to normal (having standardized moments $0, \sigma, 0, \sigma^2$) a distribution is. The Jarque-Bera test is a very common statistical test that compares whether sample data has skewness and kurtosis similar to a normal distribution. We can run it here on the S&P 500 returns to find the p-value for them coming from a normal distribution.
from statsmodels.stats.stattools import jarque_bera
print "JB test p-value: ", jarque_bera(returns)[1]
This tells us that the S&P 500 returns likely do not follow a normal distribution.
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