You can do it either way, ranks or raw scores. If you do ranks, there's less need to cap and floor, since the distribution is uniform.
The key to remember with factors is you think there is some true underlying effect. In the case of momentum there are several candidates. The simplest is that people who bring information to market lack the capital to take full advantage of their knowledge, so that if there has been net good news about a security in the recent past then there is likely also net good news not yet incorporated into the price. Anyway, whatever your theory, it doesn't argue for one particular measure of momentum versus another. A security that has true momentum, in the sense of lots of unincorporated good or bad news, is more likely than not to stand out on all momentum measures, but not necessarily likely to stand out by a lot on any. So you like the securities that show a lot of agreement, that have the same direction momentum however you measure momentum.
For your second question, I do not have references. Unfortunately, there are not good references on this stuff. But I recommend separating the issue of signal from the issue of trading triggers. Design the most accurate signal you can, ignoring trading costs. Use that to compute your ideal portfolio at any time. Then design a separate algorithm to tell you when to rebalance your existing portfolio to get closer to the ideal.
One reason I suggest this is that it seems to work best for most people. Another is that it makes it easy to manage your strategy. You can add new strategies, or move up and down in size, or make other adjustments and only work with the half of your strategy that is affected by the changes.